The semester is over, so let’s get back to work on Dinosaur Island!

My name and office listed among many of the professors who taught me in grad school.

My name and office listed among many of the professors who taught me in grad school. (Click to enlarge.)

I’ve had a wonderful time teaching computer science at the University of Iowa as a Visiting Assistant Professor but now the semester is over and it’s time to get back to work on Dinosaur Island.

Most professors assign reading at the beginning of the semester, but I want to share a number of great academic papers that have been forwarded to me and I am just now getting time to read.

First is a fascinating and very important paper by Dr. Nathan P. Myhrvold entitled Revisiting the Estimation of Dinosaur Growth Rates (it can be downloaded here). Myhrvold writes, “The analyses reported here find that only a few dinosaur growth data sets exhibit a marked slowing of growth with age and that most previous qualitative assumptions of asymptotic growth were incorrect.” And, “Mature individuals seem to be missing or underrepresented in the data on a wide range of taxonomic groups, including ornithopods, theropods, ceratopsians, hadrosaurs, sauropods and prosauropods.” In essence, Myhrvold suggests that some dinosaur growth rates are lower than previously thought. Dinosaur Island is – for lack of a better phrase – “An Excel spreadsheet for dinosaurs.” By this I mean that Dinosaur Island was designed to play ‘what if’ with various models of dinosaur behavior, growth, food consumption, etc. Below is a portion of the dialog box in Dinosaur Island where the user can change the rate of growth and food consumption requirements for a T. rex.

Portion of a dialog box that allows the user to change the rate of growth and food consumption variables for a T. rex (screen shot from Dinosaur Island).

Portion of a dialog box that allows the user to change the rate of growth and food consumption variables for a T. rex (screen shot from Dinosaur Island).

My recent work on creating an equation for calculating the probability of a dinosaur detecting another dinosaur by scent (see New scent detection algorithm integrated into Dinosaur Island link here) has brought some welcome feedback. Paleontologist Dr. Jordan Mallon kindly forwarded the Science article Nostril Position in Dinosaurs and Other Vertebrates and its Significance for Nasal Function by Lawrence M. Witmer can be downloaded here (note, subscription needed to download) and Evolution of olfaction in non-avian theropod dinosaurs and birds by Zelenitsky, Therrien, Ridgely, McGee and Witmer) can be downloaded here.

Skull and fleshed-out restorations of the head of the nonavian theropod dinosaur, Turannosaurus, rex, in left rostrodorsolate ral view showing the bony nostril and varying views of the position of the fleshy nostril. (A) Skull, showing the bony nostril; note also the narial fossa on the bone's adjacent to the opening. (B) Head showing the caudal position of the fleshy notril typically depicted in most scientific and popular restorations. (C) Head showing the nostral position of the fleshy notril supported by the data presented here. From Science  3 August, 2001 (click to enlarge).

Skull and fleshed-out restorations of the head of the nonavian theropod dinosaur, Tyrannosaurus, rex, in left rostrodorsolate ral view showing the bony nostril and varying views of the position of the fleshy nostril. (A) Skull, showing the bony nostril; note also the narial fossa on the bone’s adjacent to the opening. (B) Head showing the caudal position of the fleshy nostril typically depicted in most scientific and popular restorations. (C) Head showing the nostril position of the fleshy nostril supported by the data presented here. From Science 3 August, 2001 (click to enlarge).

Witmer writes, “…there may be more to nostril position than just its role in conveying an airstream across the nasal apparatus. Olfaction remains important in many extant anmiote groups, being intimately associated with critical behaviors (e.g. feeding, reproduction, predator detection, territoriality), and it has been argued that some dinosaurs had significant olfactory capabilities.”

Zelenisky, et. al writes, “… our results show that olfaction continued to become relatively more important during the transition from non-avian theropods to early neornithines, thus indicating that olfaction was another significant sensory modality during early avian evolution.”

I would also like to mention two other articles that have been forwarded to us: Intra-guild competition and its implications for one of the biggest terrestrial predators, Tyrannosaurus rex by Carbone, Turvey and Bielby (download here) and Eulerian-Lagrangian model for predicting odor dispersion using instrumental and human measurements by Schiffman, McLaughlin, Katul and Nagle (download here). The Schiffman, McLaughlin, Katul and Nagle article presents a model for odor dispersal in swine confinement facilities. It did not include an equation, but the results seem similar to my own work here. However, my equation produces a more ‘bulbous’ dispersal pattern (NB: changing the values M and the multiplier (1.5) of WindSpeed (or adding a multiplier to (90 – angle)  would create a longer and thinner detection area that is similar to the Eulerian-Lagrangian model).

Carbone et. al writes, “As an active large prey specialist, feeding on herbivores of similar or grater mass, T. rex would have had feeding habits consistent with prey size selection patterns found in extant mammalian carnivores. We propose that this is the most likely feeding strategy for T. rex.”

Two other articles that are of special importance to our research are Binocular vision in theropod dinosaurs by Kent A. Stevens (can be downloaded here) and Relative brain size and behavior in archosaurian reptiles by James A. Hopson (can be downloaded here).

Stevens (who is also a computer scientist) did work in modeling reconstructions of various dinosaur heads and then calculating their binocular field of vision. We used this paper for the default values for field of vision for T. rex (see New sight and smell variables added to Dinosaur Island). Stevens writes, “… Tyrannosaurus… had cranial designs that afforded binocular fields between 45-60º in width similar to those of modern raptorial birds.  He also writes, “One might therefore envision an alert, hungry Tyrannosaurus rex raising its head to maximum height, its keen olfactory sensitivity catching the scent of living prey and not just carrion… In particular, due to its great scale and broad frontal vision, Tyrannosaurus rex, of all sighted observers to have ever lived, might have experienced the most spectacular view of the the three-dimensional world.”

Hopson, in his paper on dinosaur behavior, observes, “…the brains of dinosaurs fall within the expected range for reptiles of their body size.” And, “The larger ceratopsians, with their great horned heads, relied on active defensive strategies and presumably required somewhat grater agility than the tail-weaponed forms, both in fending off predators and in intraspecific combat bouts.” Hopson also observes, “The best evidence for the existence of coordinated group behavior in dinosaurs is provided by multiple trackways that show the parallel movement of several or many individuals in the same direction.” And, later, “…smaller tracks are toward the center of the group and the largest are at the periphery. This suggests that the largest adults sheltered the vulnerable juveniles at the center of the herd.”

We are always very happy to receive email; especially when a link to a fascinating article (like those above) is included. Please feel free to forward scholarly articles that are relevant to the development of Dinosaur Island to Ezra [at] Dinosaur-Island.com.

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New scent detection algorithm integrated into Dinosaur Island.

The finished equation for determining the probability of a dinosaur detecting the smell of another given wind direction, velocity, distance and bearing. Click to enlarge.

The finished equation for determining the probability of a dinosaur detecting the smell of another given wind direction, velocity, distance and bearing. Click to enlarge.

Above is the equation for calculating the probability that one dinosaur can smell another dinosaur given the wind direction, wind velocity, distance and bearing of dinosaur one to dinosaur two. A great deal of work went into this equation and I must thank my good friends and colleagues, Alberto Segre and Mike Morton, for all their help, feedback and encouragement.

Below are examples of the output of the equation with various wind direction and wind velocities:

Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters. Click to enlarge.

Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters. 

    Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters. Click to enlarge.

Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters. 

    Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters. Click to enlarge.

Results of the equation showing likelihood of detecting a scent at a specific location given the wind direction and wind velocity. Each square is 100 meters.

Below is a screen capture from Dinosaur Island showing the results of the new scent detection algorithm (coupled with the newly added olfactory acuity variable, see New sight and smell variables added to Dinosaur Island).

Screen capture of Dinosaur Island with new scent detection algorithm integrated.

Screen capture of Dinosaur Island with new scent detection algorithm integrated into the AI. Note AI output on right (highlighted by red box): Gertie, the Edmontosaurus, cannot see Jim, the T. rex, but she can smell him. Click to enlarge.

While developing the scent detection algorithm and reading about the extent and frequency of injuries sustained by T. rex (broken ribs appear in about 25% of known T. rex fossils) it seemed very likely that an old T. rex (and T. rex did not achieve sexual maturity until their twenties) had to be a very cautious hunter. An Edmontosaurus regalis tail could break T. rex ribs if the Edmontosaurus was aware that the T. rex attack was imminent. As we will see in the next post, a smart hunting T. rex must have had to employ clever tactics to avoid both visual and olfactory detection as it approached its prey.

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Tyrannosaurus rex hunting an Edmontosaurus regalis

A Tyrannosaurus rex (Barney) on the left has identified an Edmontosaurus regalis (Gertie) on the right. Screen capture (click to enlarge).

A Tyrannosaurus rex (Barney) on the left has identified an Edmontosaurus regalis (Gertie) on the right. Red lines indicate respective dinosaur’s goals (food). (Click to enlarge.)

Today the AI (Artificial Intelligence) routines for the inhabitants of Dinosaur Island to identify food were put in place and tested. The above screen capture shows the results: Gertie, a hungry Edmontosaurus regalis, has spied a forest of Araucaria trees on higher ground about 55 meters to the north-northeast. Barney, a very hungry nine year-old Tyrannosaurus rex has spotted Gertie 145 meters almost due east on the other side of a creek bed lined with Nipa plants. This doesn’t look good for Gertie. Will one and a half football fields be enough of a head start? How long will Barney pursue dinner before the energy expended will be too great? Look at Barney’s health. He hasn’t eaten for a while and he doesn’t have much energy left.

A reminder: the 2D ‘top down’ version of Dinosaur Island is just for testing and scenario creation purposes. Dinosaur Island will be released in full 3D. Dinosaur Island is a unique interactive simulation of real dinosaurs in their natural environment.

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A Tyrannosaurus rex named Sue.

How the user specifies the creation of a new dinosaur (screen capture).

How the user specifies the creation of a new dinosaur (screen capture). Click to see full-size.

It’s finally that time: we’re adding dinosaurs to Dinosaur Island now. Above is the ‘creation’ screen. As you can see we are modeling each dinosaur in great detail. We are tracking how much they’ve eaten, how much energy they’re expending, what their diet is, age, health. You can even give each dinosaur a personal name.

By the way, none of this is necessary for you to enjoy Dinosaur Island. This is just a glimpse of the ‘behind the scene’ details that we are implementing to assure historical accuracy.

Trivia question: do you know why this T. rex is named Sue? See here for the answer.

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What’s for dinner?

Abydosaurus having breakfast. (This was found on the internet without a credit; if this is your image, please let us know)

Abydosaurus having breakfast. (This was found on the internet without a credit; if this is your image, please let us know)

For the last week I have been busy researching the details of the food chain of the first inhabitants on Dinosaur Island: Tyrannosaurus rex, Edmontosaurus regalisNipa and Araucaria. The papers that I have been reading are: “Could Tyrannosaurus rex have been a scavenger rather than a predator? An energetics approach,” Ruxton and Houston, The Royal Society, February 2003; “Giants on the landscape: modeling the abundance of megaherbivorous dinosaurs of the Morrison Foundation (Late Jurassic, western USA),” Farlow, Caroian and Foster, Historical Biology, Vol. 22, No. 4, December 2013, pp. 403-429 and “Sauropod Feeding and Digestive Physiology, Hummel and Clauss, Biology of the Sauropod Dinosaurs”, Indiana University Press, 2011 pp. 11-33.

The first food chain on Dinosaur Island is illustrated below:

The T. rex, Edmontosaurus regalis, Nipa and Araucaria food chain.

The T. rex, Edmontosaurus regalis, Nipa and Araucaria food chain. How much energy does the Edmontosaurus receive from eating one Nipa plant? How much energy does the T. rex receive from eating one Edmontosaurus?

What we are trying to ascertain is exactly how much energy is transferred each step of the way. How much energy does the Edmontosaurus receive from eating one Nipa plant? How much energy does the T. rex receive from eating one Edmontosaurus?

For example, in Sauropod Feeding and Digestive Physiology we learn that Araucariaceae is estimated by one source to produce 7.0 Mega Joules per kilogram of dry matter but by another source as between 6.3 and 10.8 Mega Joule per kilogram of dry matter. In Giants on the landscape: modeling the abundance of megaherbivorous dinosaurs of the Morrison Foundation one model is that the estimated energy consumption for a megaherbivore is  55 kilo Joules over kilograms of body mass0.75 per day and another model is for 550 kilo Joules over kilograms of body mass0.75 per day. In Was Tyrannosaurus rex a scavenger? there are also estimates for the energy produced per kilogram of carrion and the amount of energy needed by T. rex if it was a scavenger (slow moving) or a hunter (very fast moving).

As I’ve said before: I’m a computer scientist, not a paleontologist and right now I feel like I’m back in grad school just trying to keep up with my first year classes.  However, I have no doubt that Dinosaur Island will be a very useful tool for answering some of the questions raised in these papers.

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